![]() Gordon Robertson, Jacqueline Schein, Readman Chiu, Richard Corbett, Matthew Field, Shaun D Jackman, Karen Mungall, Sam Lee, Hisanaga Mark Okada, Jenny Q Qian, Malachi Griffith, Anthony Raymond, Nina Thiessen, Timothee Cezard, Yaron S Butterfield, Richard Newsome, Simon K Chan, Rong She, Richard Varhol, Baljit Kamoh, Anna-Liisa Prabhu, Angela Tam, YongJun Zhao, Richard A Moore, Martin Hirst, Marco A Marra, Steven J M Jones, Pamela A Hoodless Marco A Marra, Steven J M Jones, Pamela A Hoodless and İnanç Birol. De novo assembly and analysis of RNA-seq data.İnanç Birol, Shaun D Jackman, Cydney Nielsen, Jenny Q Qian, Richard Varhol, Greg Stazyk, Ryan D Morin, Yongjun Zhao, Martin Hirst, Jacqueline E Schein, Doug E Horsman, Joseph M Connors, Randy D Gascoyne, Marco A Marra and Steven JM Jones. De novo Transcriptome Assembly with ABySS.Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. ( Genome Research, PubMed)ĪBySS: A parallel assembler for short read sequence data. PublicationsĪBySS 2.0: resource-efficient assembly of large genomes using a Bloom filter. Jackman SD, Vandervalk BP, Mohamadi H, Chu J, Yeo S, Hammond SA, Jahesh G, Khan H, Coombe L, Warren RL, Birol I. Genome Research, 2017 27: 768-777. June 2015, 12th 2 Conference in Basel, Switzerland: ABySS was the winner of the Swiss Institute of Bioinformatics’ inaugural International Bioinformatics Resource Award. To assemble transcriptome data, see Trans-ABySS. ![]() The parallel version is implemented using MPI and is capable of assembling larger genomes. The single-processor version is useful for assembling genomes up to 100 Mbases in size. ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads.
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